Publications

I am broadly interested in harnessing machine learning to address pressing questions in both computational biology and chemistry with a focus on building reliable ML models from unreliable data. Some of my current research interests include:

Below are my academic publications and research contributions:

Publications

  1. Nucleic Acids Res
    Yash Chainani, Margaret Guilarte-Silva, Kenna Roberts, Stefan Pate, Geoffrey Bonnanzio, Keith E. J. Tyo, Aindrila Mukhopadhyay, Jay D. Keasling, Hector Garcia Martin, Linda J. Broadbelt & Tyler W. H. Backman
    Nucleic Acids Research, 2026.

  2. bioRxiv
    Yash Chainani, Aidan Cornman, Yunha Hwang
    bioRxiv, 2026. Work done in collaboration with Tatta Bio during my internship.

  3. Nat Commun
    Yash Chainani, Jacob Diaz, Margaret Guilarte-Silva, Vincent Blay, Quan Zhang, William Sprague, Keith E. J. Tyo, Linda J. Broadbelt, Aindrila Mukhopadhyay, Jay D. Keasling, Hector Garcia Martin & Tyler W. H. Backman
    Nature Communications, 2025.

  4. Mol Syst Des Eng
    Yash Chainani, Zhuofu Ni, Kevin M. Shebek, Linda J. Broadbelt, Keith E. J. Tyo
    Molecular Systems Design & Engineering, 2025.

  5. Curr Opin Biotechnol
    Yash Chainani, Geoffrey Bonnanzio, Keith E. J. Tyo, Linda J. Broadbelt
    Current Opinion in Biotechnology, 2023.